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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sumo1, SMT3 suppressor of mif two 3 homolog 1 (yeast)
Sequence ID:NM_009460
Entrez Gene ID:22218
Ensembl ID:ENSMUSG00000026021

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1|1 C2-C3

Chromosomal Position (from UCSC)

Chromosomal Position:1: 59639436 - 59670809

NM_009460 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
168505969627759697111
8519225969926159699332
92310005970136059701437
100110755971230159712375
107612305972752359727677

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6478032Full LengthBC083158SMT3 suppressor of mif two 3 homolog 1 (yeast)
30602751Full LengthBC082566SMT3 suppressor of mif two 3 homolog 1 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033486  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009460 NP_033486 P63166 ubiquitin

Related Sequences

 
mRNAGenPeptSwissProt
AF033353 AAC39959 P63166
BC082566 AAH82566 P63166
BC083158 AAH83158 P63166
AK002536 BAB22172 P63166
AK011074 BAB27379 P63166
AK089081 BAC40739 P63166
AK159366 BAE35024 P63166

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sumo1 NP_033486 H.sapiens SUMO1 7341 Gene Info NP_001005781 100
R.norvegicus Sumo1 301442   NP_001009672 100
C.elegans smo-1 266820   NP_490842 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta