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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ctss, cathepsin S
Sequence ID:NM_001267695
NM_021281
Entrez Gene ID:13040
Ensembl ID:ENSMUSG00000038642

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F2.1|3 42.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 95526843 - 95556398

Transcript StartTranscript EndChromosomal Start Chromosomal End
11409533070795330846
1412649533335895333481
2653879534264295342764
3885379534693495347083
5387689534925495349484
7699349535071795350882
93510379535397495354076
103813559536000795360324

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3495719Full LengthBC002125cathepsin S

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067256  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001267695 NP_001254624    
NM_021281 NP_067256   Peptidase_C1
Inhibitor_I29

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF038546 AAB94925 O70370 EC 3.4.22.27
BC002125 AAH02125 Q99M14  
AK028366 BAC25906 Q8BSZ5  
AK150274 BAE29430 Q3UD32  
AK150758 BAE29827 Q3UBR4  
AK150842 BAE29900 Q3UBR4  
AK152618 BAE31361 Q3UBR4  
AK153540 BAE32077 Q3U5K1  
AJ002386 CAA05360 O70370 EC 3.4.22.27
AJ223208 CAA11182 O70370 EC 3.4.22.27
Y18466 CAA77184 O70370 EC 3.4.22.27

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctss NP_067256 R.norvegicus Ctss 50654   NP_059016 83
H.sapiens CTSS 1520 Gene Info NP_004070 76
A.thaliana XBCP3 837517   NP_563855 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)