Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cir1, corepressor interacting with RBPJ, 1
Sequence ID:XM_003689340
NM_025854
Entrez Gene ID:66935
Ensembl ID:ENSMUSG00000041777

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 C3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 73285020 - 73312527

NM_025854 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111647312192873123091
116512507312439473124479
125113577312566573125771
135814757314179673141913
147615247314394673143994
152515897314433373144397
159016007314448473144494
160116747314491173144984
167517697314851373148607
177019457315047373150648

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3667130IncompleteBC094283RIKEN cDNA 1700023B02 gene
6742536IncompleteBC061077RIKEN cDNA 1700023B02 gene
6752163IncompleteBC089602RIKEN cDNA 1700023B02 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025854 NP_080130 Q9DA19  

Related Sequences

 
mRNAGenPeptSwissProt
BC089602 AAH89602 Q9DA19
BC094283 AAH94283 Q9DA19
AK006260 BAB24488 Q9DA19
AK131674 BAE20758 Q9DA19
XM_003689340 XP_003689388  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cir1 NP_080130 R.norvegicus Cir1 362149   NP_001007800 93
H.sapiens CIR1 9541 Gene Info NP_004873 82
A.gambiae AgaP_AGAP004952 1275764   XP_315050 53
D.melanogaster CG6843 40062   NP_649072 45
C.elegans cir-1 172225   NP_491654 43
A.thaliana AT4G19190 827658   NP_193654 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)