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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lmo1, LIM domain only 1
Sequence ID:NM_057173
Entrez Gene ID:109594
Ensembl ID:ENSMUSG00000036111

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 E3|7 51.5

Chromosomal Position (from UCSC)

Chromosomal Position:7: 109138577 - 109170056

NM_057173 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
76480116282085116282489
481606116284095116284220
607820116286969116287182
8211146116313496116313821

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5693266Full LengthBC053074LIM domain only 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_476514  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_057173 NP_476514 Q924W9
Q3UZX1
LIM

Related Sequences

 
mRNAGenPeptSwissProt
BC053074 AAH53074 Q924W9
Q3UZX1
AK133586 BAE21734 Q924W9
Q3UZX1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lmo1 NP_476514 H.sapiens LMO1 4004 Gene Info NP_002306 99
R.norvegicus Lmo1 245979   NP_620812 99
D.melanogaster Bx 32846   NP_523402 79
A.gambiae AgaP_AGAP000731 1272320   XP_311266 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)