Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cops2, COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
Sequence ID:NM_009939
Entrez Gene ID:12848
Ensembl ID:ENSMUSG00000027206

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 F1|2 70.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 125831600 - 125858985

 Exon Info From UCSC:
NM_009939

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3675508Full LengthBC023096COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034069  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009939 NP_034069 P61202 PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF071312 AAC33899 P61202
AF087688 AAC36309 P61202
BC023096 AAH23096 P61202
AK010383 BAB26900 P61202
AK084421 BAC39179 P61202
AK037757 BAE20520 Q3V3N6
AK132207 BAE21033 P61202
AK146153 BAE26937 Q3UK65

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cops2 NP_034069 H.sapiens COPS2 9318 Gene Info NP_004227 100
R.norvegicus Cops2 261736   NP_695209 100
D.melanogaster alien 34225   NP_523517 84
A.gambiae AgaP_AGAP008598 1275451   XP_314698 84
C.elegans csn-2 172278   NP_491740 67
A.thaliana FUS12 817241   NP_565632 61
N.crassa NCU00593 3881875   XP_965733 52
S.pombe csn2 3361420   NP_001018220 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)