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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rpl29, ribosomal protein L29
Sequence ID:NM_009082
Entrez Gene ID:19944
Ensembl ID:ENSMUSG00000048758

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 F2-F4

Chromosomal Position (from UCSC)

Chromosomal Position:9: 106429538 - 106431567

NM_009082 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1101106331869106331969
102146106332300106332344
147211106332638106332702
212710106333399106333897

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1430129Full LengthBC096575ribosomal protein L29
2651191Full LengthBC092262ribosomal protein L29
3590425Full LengthBC002062ribosomal protein L29
5006561Full LengthBC094039ribosomal protein L29
6487045Full LengthBC082292ribosomal protein L29
6775819Full LengthBC086897ribosomal protein L29
6823037Full LengthBC081467ribosomal protein L29
30120979Full LengthBC086898ribosomal protein L29
30122718Full LengthBC087950ribosomal protein L29

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033108  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009082 NP_033108 Q5M8M8
P47915
Ribosomal_L29e

Related Sequences

 
mRNAGenPeptSwissProt
L08651 AAA16857 Q5M8M8
P47915
BC002062 AAH02062 Q5M8M8
P47915
BC081467 AAH81467 Q5M8M8
P47915
BC082292 AAH82292 Q5M8M8
P47915
BC086897 AAH86897 Q5M8M8
P47915
BC086898 AAH86898 Q5M8M8
P47915
BC087950 AAH87950 Q5M8M8
P47915
BC092262 AAH92262 Q5M8M8
P47915
BC094039 AAH94039 Q5M8M8
P47915
BC096575 AAH96575 Q5M8M8
P47915
AK013307 BAB28782 Q5M8M8
P47915
AK088551 BAC40419 Q5M8M8
P47915
AK141477 BAE24697 Q5M8M8
P47915
AK167284 BAE39390 Q5M8M8
P47915

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpl29 NP_033108 M.musculus Gm8210 666642   XP_990228 100
M.musculus Gm13841 665032   XP_979163 100
M.musculus Gm6344 622707 Gene Info XP_001475761 99
M.musculus LOC100503055 100503055   XP_003085375 99
M.musculus Gm10709 100039782 Gene Info XP_001473361 99
M.musculus Gm5561 433941 Gene Info XP_001478414 98
M.musculus Gm17669 100504629 Gene Info XP_003085263 98
M.musculus Gm10913 100503125   XP_003085154 97
M.musculus Gm3550 100041859 Gene Info XP_001477526 97
M.musculus Gm12508 670211   XP_001476205 97
M.musculus Gm13213 545683   XP_620107 95
R.norvegicus Rpl29 29283   NP_058846 95
M.musculus Gm11449 383770   XP_357236 94
R.norvegicus RGD1565306 500645   XP_576023 94
M.musculus Gm5218 383080 Gene Info XP_356848 93
R.norvegicus RGD1564980 500019   XP_575373 91
H.sapiens RPL29 6159 Gene Info NP_000983 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)