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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ift20, intraflagellar transport 20
Sequence ID:NM_018854
Entrez Gene ID:55978
Ensembl ID:ENSMUSG00000001105

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 78536435 - 78541473

NM_018854 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11417834993778350077
1423707835201178352239
3714997835233578352463
5005857835346178353546
5866897835439678354499
6908027835486278354974

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3590790Full LengthBC002040intraflagellar transport 20 homolog (Chlamydomonas)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018854 NP_061342 Q61025  

Related Sequences

 
mRNAGenPeptSwissProt
U38981 AAA81518 Q61025
BC002040 AAH02040 Q61025
AY082613 AAL99202 Q61025
AK002397 BAB22069 Q61025
AK139942 BAE24189 Q61025

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ift20 NP_061342 R.norvegicus Ift20 287541   NP_001099285 98
A.gambiae AgaP_AGAP006172 5667163   XP_001688809 45
D.melanogaster CG30441 246616   NP_724409 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)