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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Synpo2l, synaptopodin 2-like
Sequence ID:NM_175132
Entrez Gene ID:68760
Ensembl ID:ENSMUSG00000039376

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 A3|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 20658947 - 20660264

NM_175132 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
130482147863921481686
304935632148496521485479
356437152148586921486020
371639222148732121487527

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860991Full LengthBC137972synaptopodin 2-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780341  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175132 NP_780341 Q8BWB1 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
BC137972 AAI37973 B2RQK7
AK053054 BAC35251 Q8BWB1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Synpo2l NP_780341 R.norvegicus Synpo2l 305675   XP_223791 95
H.sapiens SYNPO2L 79933 Gene Info NP_001107605 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)