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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cpsf3, cleavage and polyadenylation specificity factor 3
Sequence ID:NM_018813
Entrez Gene ID:54451
Ensembl ID:ENSMUSG00000054309

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 A1.2-A1.3|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 21286443 - 21314771

 Exon Info From UCSC:
NM_018813

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4192224Full LengthBC023297cleavage and polyadenylation specificity factor 3
30041540Full LengthBC100569cleavage and polyadenylation specificity factor 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061283  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018813 NP_061283 Q9QXK7 Lactamase_B
RMMBL

Related Sequences

 
mRNAGenPeptSwissProt
AF203969 AAF19420 Q9QXK7
BC023297 AAH23297 Q9QXK7
BC100569 AAI00570 Q497G2
AK004317 BAB23259 Q9CT87
AK010566 BAB27031 Q9CWL0
AK045238 BAC32275 Q8BRA5
AK149953 BAE29190 Q3UDS1
AK157205 BAE33998 Q3U057
AK170842 BAE42066 Q3TC91

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cpsf3 NP_061283 R.norvegicus Cpsf3 298916   NP_001025201 100
H.sapiens CPSF3 51692 Gene Info NP_057291 99
A.gambiae AgaP_AGAP001224 1281946   XP_321933 78
D.melanogaster Cpsf73 42240   NP_650738 68
C.elegans cpsf-3 178285   NP_502553 61
A.thaliana CPSF73-I 842393   NP_849835 56
S.pombe ysh1 2542258   NP_594263 50
S.cerevisiae YSH1 850983   NP_013379 47
N.crassa NCU03479 3872515   XP_956368 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta