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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slirp, SRA stem-loop interacting RNA binding protein
Sequence ID:NM_026958
Entrez Gene ID:380773
Ensembl ID:ENSMUSG00000021040

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12|12 E

Chromosomal Position (from UCSC)

Chromosomal Position:12: 87443929 - 87449918

NM_026958 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11318878484588784975
1321908878851388788571
1912988879024288790349
2994188879075388790872

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40126058Full LengthBC116739RIKEN cDNA 1810035L17 gene
40126060Full LengthBC116741RIKEN cDNA 1810035L17 gene
3974474IncompleteBC065396RIKEN cDNA 1810035L17 gene
6431587IncompleteBC100567RIKEN cDNA 1810035L17 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081234  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026958 NP_081234 Q9D8T7 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC100567 AAI00568 Q9D8T7
BC116739 AAI16740 Q9D8T7
Q14AR0
BC116741 AAI16742 Q14AR0
AK007699 BAB25197 Q9D8T7
AJ293625 CAC34586 Q9D8T7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 1810035L17Rik NP_081234 R.norvegicus Slirp 688717   NP_001102977 89
H.sapiens SLIRP 81892 Gene Info NP_112487 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)