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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cycs, cytochrome c, somatic
Sequence ID:NM_007808
Entrez Gene ID:13063
Ensembl ID:ENSMUSG00000063694

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 B2.3|6 23.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 50564432 - 50566475

NM_007808 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
128235051256150515383
282430005051549050515666
300130595051641450516472

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2650742Full LengthBC034363cytochrome c, somatic
2865963Full LengthBC094054cytochrome c, somatic
6845432Full LengthBC092213cytochrome c, somatic

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031834  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007808 NP_031834 Q56A15
P62897
Cytochrom_C

Related Sequences

 
mRNAGenPeptSwissProt
BC034363 AAH34363 Q56A15
P62897
BC092213 AAH92213 Q56A15
P62897
BC094054 AAH94054 Q56A15
P62897
AK002732 BAB22313 Q56A15
P62897
AK003168 BAB22617 Q56A15
P62897
AK005336 BAB23959 Q56A15
P62897
AK010651 BAB27091 Q56A15
P62897
AK088098 BAC40143 P62897
AK143887 BAE25584 Q56A15
P62897

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cycs NP_031834 M.musculus Gm10053 672195 Gene Info XP_001478454 100
R.norvegicus LOC100363502 100363502   XP_002728600 100
R.norvegicus Cycs 25309   NP_036971 100
H.sapiens CYCS 54205 Gene Info NP_061820 91
A.gambiae AgaP_AGAP009537 1271373   XP_310154 87
D.melanogaster Cyt-c-p 34996   NP_477176 86
P.falciparum PF14_0038 811620   XP_001348211 68
A.thaliana CYTC-1 838889   NP_173697 65
A.thaliana CYTC-2 826595   NP_192742 64
C.elegans cyc-2.2 179728   NP_506156 62
C.elegans cyc-2.1 177243   NP_500629 62
S.cerevisiae CYC7 856672   NP_010875 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta