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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cckar, cholecystokinin A receptor
Sequence ID:NM_009827
Entrez Gene ID:12425
Ensembl ID:ENSMUSG00000029193

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 C1|5 34.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 53698570 - 53707561

NM_009827 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
118285408972354091550
182919565409246154092588
195722185409409854094359
221924705409749254097743
247129295409848454098942

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4236240Full LengthBC020534cholecystokinin A receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033957  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009827 NP_033957 O08786 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC020534 AAH20534 O08786
AK004730 BAB23512 O08786
AK164301 BAE37726 Q3TPL0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cckar NP_033957 R.norvegicus Cckar 24889   NP_036820 96
H.sapiens CCKAR 886 Gene Info NP_000721 91
D.melanogaster CCKLR-17D1 32860   NP_001097021 42
D.melanogaster CCKLR-17D3 32864   NP_001097023 41
C.elegans ckr-2 175341   NP_001022844 37
C.elegans ckr-1 188774   NP_491918 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)