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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vmn1r42, vomeronasal 1 receptor 42
Sequence ID:NM_053221
Entrez Gene ID:113848
Ensembl ID:ENSMUSG00000068232

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D1|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 89844517 - 89845615

NM_053221 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19428979458989795530

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40129887Full LengthBC125372vomeronasal 1 receptor, A6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444451  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053221 NP_444451 Q8VBS7 V1R

Related Sequences

 
mRNAGenPeptSwissProt
BC125372 AAI25373 Q05A83

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vmn1r42 NP_444451 M.musculus Vmn1r43 113847 Gene Info NP_444450 87
M.musculus Vmn1r45 22297 Gene Info NP_035814 84
M.musculus Vmn1r51 22296 Gene Info NP_035813 84
M.musculus Vmn1r48 113845 Gene Info NP_444448 81
M.musculus Vmn1r47 113846 Gene Info NP_444449 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)