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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Npc1, Niemann Pick type C1
Sequence ID:NM_008720
Entrez Gene ID:18145
Ensembl ID:ENSMUSG00000024413

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18 A1|18 4.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 12189861 - 12236358

 Exon Info From UCSC:
NM_008720

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6405214Full LengthBC052437Niemann Pick type C1
6405214Full LengthBC054539Niemann Pick type C1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032746  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008720 NP_032746 O35604 Patched

Related Sequences

 
mRNAGenPeptSwissProt
AF003348 AAB63372 O35604
BC052437 AAH52437 Q7TMD4
BC054539 AAH54539 Q7TMD4
AK044878 BAC32127 Q8BLK0
AK154282 BAE32486 Q3U2B2
AK155379 BAE33230 Q3U2B2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Npc1 NP_032746 R.norvegicus Cdig2 266732   XP_002728567 94
H.sapiens NPC1 4864 Gene Info NP_000262 86
A.gambiae AgaP_AGAP008137 1277820   XP_317322 47
D.melanogaster Npc1a 34358   NP_609357 46
A.thaliana AT4G38350 829992   NP_001190953 40
A.thaliana AT1G42470 840851   NP_174975 39
N.crassa NCU04090 3872233   XP_956086 38
S.cerevisiae NCR1 856101   NP_015319 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)