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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Higd1a, HIG1 domain family, member 1A
Sequence ID:NM_019814
Entrez Gene ID:56295
Ensembl ID:ENSMUSG00000038412

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F4|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 121848559 - 121852610

NM_019814 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11130121757677121758806
11311265121759305121759439
12661384121761608121761726
13851873121766629121767117

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5060413Full LengthBC090259HIG1 domain family, member 1A
5148784Full LengthBC021594HIG1 domain family, member 1A
8861324Full LengthBC151191HIG1 domain family, member 1A
40130648Full LengthBC132371HIG1 domain family, member 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062788  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019814 NP_062788 Q9JLR9 HIG_1_N

Related Sequences

 
mRNAGenPeptSwissProt
AF141312 AAF25721 Q9JLR9
BC021594 AAH21594 Q9JLR9
BC090259 AAH90259 Q9JLR9
BC132371 AAI32372 Q1XG81
BC151191 AAI51192 Q1XG81
AY028386 AAK21982 Q9JLR9
AY028387 AAK21983 Q8R472
AK004166 BAB23202 Q9JLR9
AK008756 BAB25877 Q9JLR9
AK018360 BAB31176 Q9JLR9
AB253941 BAE92116 Q1XG81

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Higd1a NP_062788 M.musculus Gm9790 100042265 Gene Info NP_001106138 99
R.norvegicus Higd1a 140937   NP_543178 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)