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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. C1qtnf6, C1q and tumor necrosis factor related protein 6
Sequence ID:NM_001204152
NM_001204153
NM_028331
Entrez Gene ID:72709
Ensembl ID:ENSMUSG00000022440

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 78523347 - 78529592

Transcript StartTranscript EndChromosomal Start Chromosomal End
113137835451578355827
131415547835765778357897
155516547835994778360046

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6395221Full LengthBC071187C1q and tumor necrosis factor related protein 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082607  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001204152 NP_001191081    
NM_001204153 NP_001191082    
NM_028331 NP_082607 Q6IR41 C1q
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC025489 AAH25489 Q8R150
BC071187 AAH71187 Q6IR41
DQ002399 AAY21931 Q6IR41
AK051058 BAC34512 Q6IR41
AK154407 BAE32564 Q6IR41

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus C1qtnf6 NP_082607 R.norvegicus C1qtnf6 315114   NP_001030104 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)