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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox15, SRY-box containing gene 15
Sequence ID:NM_009235
Entrez Gene ID:20670
Ensembl ID:ENSMUSG00000041287

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B3|11 39.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 69655372 - 69656621

NM_009235 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15276946887469469400
5286966946995469470122

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8733816Full LengthBC119067SRY-box containing gene 15
8733818Full LengthBC119069SRY-box containing gene 15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033261  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009235 NP_033261 Q5F2B2
P43267
HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
L29084 AAA56842 Q62247
U70443 AAC52861 P43267
AF182945 AAF72108 Q5F2B2
P43267
BC119067 AAI19068 Q5F2B2
BC119069 AAI19070 Q5F2B2
AK131957 BAE20901 Q5F2B2
P43267
X98369 CAA67015 P43267

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox15 NP_033261 H.sapiens SOX15 6665 Gene Info NP_008873 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)