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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sart1, squamous cell carcinoma antigen recognized by T cells 1
Sequence ID:NM_016882
Entrez Gene ID:20227
Ensembl ID:ENSMUSG00000039148

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 5380059 - 5388661

 Exon Info From UCSC:
NM_016882

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5097832Full LengthBC028823squamous cell carcinoma antigen recognized by T-cells 1
5097832Full LengthBC051394squamous cell carcinoma antigen recognized by T-cells 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058578  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016882 NP_058578 Q9Z315 SART-1

Related Sequences

 
mRNAGenPeptSwissProt
AF129931 AAD20645 Q9Z315
BC028823 AAH28823 Q9Z315
BC051394 AAH51394 Q9Z315
AB014721 BAA36583 Q9Z315

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sart1 NP_058578 R.norvegicus Sart1 29678   NP_113784 99
H.sapiens SART1 9092 Gene Info NP_005137 96
D.melanogaster CG6686 34608   NP_723700 45
C.elegans F19F10.9 179140   NP_504952 37
A.thaliana DOT2 831541   NP_197180 33
N.crassa NCU11222 5847764   XP_001728424 33
S.cerevisiae SNU66 854485   NP_014953 30
S.pombe snu66 2542774   NP_593382 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)