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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pagr1a, PAXIP1 associated glutamate rich protein 1A
Sequence ID:NM_030240
Entrez Gene ID:67278
Ensembl ID:ENSMUSG00000030680

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 F4

Chromosomal Position (from UCSC)

Chromosomal Position:7: 127015032 - 127017328

NM_030240 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
37455134158564134158982
456538134159713134159795
5391448134159956134160865

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3485982Full LengthBC003932RIKEN cDNA 2900092E17 gene
6835446IncompleteBC054744RIKEN cDNA 2900092E17 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030240 NP_084516 Q99L02  

Related Sequences

 
mRNAGenPeptSwissProt
BC003932 AAH03932 Q99L02
AK082775 BAC38614 Q99L02

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 2900092E17Rik NP_084516 H.sapiens C16orf53 79447 Gene Info NP_078792 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)