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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col20a1, collagen, type XX, alpha 1
Sequence ID:NM_028518
Entrez Gene ID:73368
Ensembl ID:ENSMUSG00000016356

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H4|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 181013425 - 181017539

 Exon Info From UCSC:
NM_028518

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5366843IncompleteBC030415collagen, type XX, alpha 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028518 NP_082794 Q923P0  
NM_177264 NP_796238 Q8CC67  

Related Sequences

 
mRNAGenPeptSwissProt
BC016112 AAH16112 Q923P0
BC030415 AAH30415 Q923P0
AK006759 BAB24730 Q923P0
AK033807 BAC28481 Q8CC67

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col20a1 NP_082794 R.norvegicus Col20a1 311716   XP_230973 93
H.sapiens COL20A1 57642 Gene Info NP_065933 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)