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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Synpo2, synaptopodin 2
Sequence ID:NM_080451
Entrez Gene ID:118449
Ensembl ID:ENSMUSG00000050315

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 G3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 123112401 - 123114675

NM_080451 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
33740122779438122783175
37415935122815349122817543
59366717122819873122820654
67186869122824036122824187
68707116122938820122939066

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9007349Full LengthBC158045synaptopodin 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080451 NP_536699    

Related Sequences

 
mRNAGenPeptSwissProt
BC158045 AAI58046 B2RY03
AK079194 BAC37575 Q91YE8
AJ306625 CAC67798 Q91YE8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Synpo2 NP_536699 R.norvegicus Synpo2 499702   XP_575030 92
H.sapiens SYNPO2 171024 Gene Info NP_597734 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)