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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ecm1, extracellular matrix protein 1
Sequence ID:NM_001252653
NM_007899
Entrez Gene ID:13601
Ensembl ID:ENSMUSG00000028108

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F2.1|3 45.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 95734148 - 95739566


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861715Full LengthBC138693extracellular matrix protein 1
9053939Full LengthBC145381extracellular matrix protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031925  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252653 NP_001239582    
NM_007899 NP_031925 Q61508 ECM1

Related Sequences

 
mRNAGenPeptSwissProt
L33416 AAA37535 Q61508
BC138693 AAI38694 Q3TDX7
BC145381 AAI45382 B7ZNR0
AK153009 BAE31648 Q61508
AK153471 BAE32022 Q61508
AK159334 BAE34999 Q3TXB7
AK169939 BAE41471 Q3TDX7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ecm1 NP_031925 R.norvegicus Ecm1 116662   NP_446334 90
H.sapiens ECM1 1893 Gene Info NP_004416 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)