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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Arid5a, AT rich interactive domain 5A (MRF1-like)
Sequence ID:NM_001172205
NM_001172206
NM_145996
NR_033310
Entrez Gene ID:214855
Ensembl ID:ENSMUSG00000037447

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 B|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 36307753 - 36324029

 Exon Info From UCSC:
NM_001172205
NM_001172206
NM_145996

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4935168Full LengthBC027152AT rich interactive domain 5A (MRF1-like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666108  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172205 NP_001165676 Q3U108  
NM_001172206 NP_001165677    
NM_145996 NP_666108   ARID

Related Sequences

 
mRNAGenPeptSwissProt
BC027152 AAH27152 Q3U108
AK041344 BAC30913 Q3U108
AK085015 BAC39338 Q3U108
AK149839 BAE29115 Q3U108
AK150170 BAE29358 Q3U108
AK156376 BAE33692 Q3U108
AK156622 BAE33779 Q3U108
AK156934 BAE33904 Q3U108
AK157607 BAE34133 Q3U108

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arid5a NP_001165677 R.norvegicus Arid5a 316327   NP_001030106 88
H.sapiens ARID5A 10865 Gene Info NP_997646 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)