Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atxn1, ataxin 1
Sequence ID:NM_001199304
NM_001199305
NM_009124
Entrez Gene ID:20238
Ensembl ID:ENSMUSG00000046876

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 A5|13 28.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 45549757 - 45551528

Transcript StartTranscript EndChromosomal Start Chromosomal End
126934565026145652953
269447014566194145663948
470248264579318945793313
482748904583048345830546
489150194589087745891005
502051484594769645947824
514952694605182346051943
527054314606018346060344

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5326559Full LengthBC058178ataxin 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001199304 NP_001186233    
NM_001199305 NP_001186234    
NM_009124 NP_033150 P54254 AXH

Related Sequences

 
mRNAGenPeptSwissProt
BC058178 AAH58178 P54254
AK048268 BAC33290 P54254
AK155063 BAE33022 Q3U2W8
X83542 CAA58533 P54254

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atxn1 NP_033150 R.norvegicus Atxn1 25049   NP_036858 98
H.sapiens ATXN1 6310 Gene Info NP_000323 90
C.elegans K04F10.1 187002   NP_491837 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)