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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tcf3, transcription factor 3
Sequence ID:NM_001164147
NM_001164148
NM_001164149
NM_001164150
NM_001164151
NM_001164152
NM_001164153
NM_011548
Entrez Gene ID:21423
Ensembl ID:ENSMUSG00000020167

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10 43.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 80410128 - 80433349

 Exon Info From UCSC:
NM_001164147
NM_001164148
NM_001164149
NM_001164150
NM_001164151
NM_001164152
NM_001164153
NM_011548

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2631291Full LengthBC006860transcription factor E2a
4187386Full LengthBC018260transcription factor E2a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035678  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164147 NP_001157619    
NM_001164148 NP_001157620    
NM_001164149 NP_001157621 P15806  
NM_001164150 NP_001157622    
NM_001164151 NP_001157623    
NM_001164152 NP_001157624    
NM_001164153 NP_001157625    
NM_011548 NP_035678   HLH

Related Sequences

 
mRNAGenPeptSwissProt
BC006860 AAH06860 P15806
BC018260 AAH18260 P15806
AF352579 AAK18618 P15806
D16631 BAA04057 P15806
D16632 BAA04058 P15806
D16633 BAA04059 P15806
D16634 BAA04060 P15806
D16635 BAA04061 P15806
D16636 BAA04062 P15806
D16637 BAA04063 P15806
D16638 BAA04064 P15806
D29919 BAA06218 P15806
AK014300 BAB29255 Q9CRT1
AK017617 BAB30842 P15806
AK038738 BAC30118 P15806
AK156265 BAE33647 P15806
X17500 CAA35541 P15806

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tcf3 NP_001157621 R.norvegicus Tcfe2a 171046   NP_001030314 93
H.sapiens TCF3 6929 Gene Info NP_003191 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)