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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Best3, bestrophin 3
Sequence ID:NM_001007583
Entrez Gene ID:382427
Ensembl ID:ENSMUSG00000020169

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D2|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 116992702 - 116995904

NM_001007583 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1499116423369116423867
500667116425670116425837
668762116429563116429657
763996116430119116430352
9971151116439575116439729
11521229116440940116441017
12301382116441436116441588
13831463116444643116444723
14641615116445945116446096
16162719116460992116462095

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016367Full LengthBC153087bestrophin 3
100015455BC148494bestrophin 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007584  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001007583 NP_001007584 Q6H1V1 Bestrophin

Related Sequences

 
mRNAGenPeptSwissProt
BC148494 AAI48495  
BC153087 AAI53088  
AY450426 AAS09921 Q6H1V1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Best3 NP_001007584 R.norvegicus Best3 314847   XP_235161 94
H.sapiens BEST3 144453 Gene Info NP_116124 87
D.melanogaster Best3 39661   NP_730039 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)