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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sema4d, sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Sequence ID:NM_013660
Entrez Gene ID:20354
Ensembl ID:ENSMUSG00000021451

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13|13 B1

Chromosomal Position (from UCSC)

Chromosomal Position:13: 51701246 - 51723609

 Exon Info From UCSC:
NM_013660

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6509473Full LengthBC049780sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
1344433IncompleteBC027681sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038688  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013660 NP_038688 O09126 Sema
PSI

Related Sequences

 
mRNAGenPeptSwissProt
U69535 AAC52964 O09126
BC049780 AAH49780 O09126
AK088653 BAC40480 Q8BJC1
AK132688 BAE21302  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sema4d NP_038688 R.norvegicus Sema4d 306790   XP_225215 95
H.sapiens SEMA4D 10507 Gene Info NP_006369 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)