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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pcdh15, protocadherin 15
Sequence ID:NM_001142735
NM_001142736
NM_001142737
NM_001142738
NM_001142739
NM_001142740
NM_001142741
NM_001142742
NM_001142743
NM_001142746
NM_001142747
NM_001142748
NM_001142760
NM_023115
Entrez Gene ID:11994
Ensembl ID:ENSMUSG00000052613

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B5.3|10 40.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 73821882 - 74632664

 Exon Info From UCSC:
NM_001142735
NM_001142736
NM_001142737
NM_001142738
NM_001142739
NM_001142740
NM_001142741
NM_001142742
NM_001142743
NM_001142746
NM_001142747
NM_001142748
NM_001142760
NM_023115

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069454Full LengthBC172646protocadherin 15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075604  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142735 NP_001136207    
NM_001142736 NP_001136208    
NM_001142737 NP_001136209    
NM_001142738 NP_001136210    
NM_001142739 NP_001136211    
NM_001142740 NP_001136212    
NM_001142741 NP_001136213    
NM_001142742 NP_001136214    
NM_001142743 NP_001136215    
NM_001142746 NP_001136218    
NM_001142747 NP_001136219    
NM_001142748 NP_001136220    
NM_001142760 NP_001136232    
NM_023115 NP_075604 Q99PJ1 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
AF281899 AAG53891 Q99PJ1
BC172646 AAI72646  
AY949849 AAY24693 Q2VQG7
DQ354396 ABC79259 Q0ZM37
DQ354397 ABC79260 Q0ZM34
DQ354398 ABC79261 Q0ZM35
DQ354399 ABC79262 Q0ZM34
DQ354400 ABC79263 Q0ZM33
DQ354401 ABC79264 Q0ZM32
DQ354402 ABC79265 Q0ZM31
DQ354403 ABC79266 Q0ZM30
DQ354404 ABC79267 Q0ZM29
DQ354405 ABC79268 Q0ZM28
DQ354406 ABC79269 Q0ZM27
DQ354407 ABC79270 Q0ZM26
DQ354408 ABC79271 Q0ZM25
DQ354409 ABC79272 Q0ZM24
DQ354410 ABC79273 Q0ZM23
DQ354411 ABC79274 Q0ZM22
DQ354412 ABC79275 Q0ZM21
DQ354413 ABC79276 Q0ZM20
DQ354414 ABC79277 Q0ZM19
DQ354415 ABC79278 Q0ZM18
DQ354416 ABC79279 Q3UTS7
DQ354417 ABC79280 Q0ZM16
DQ354418 ABC79281 Q0ZM15
HQ404375 ADP09331 F6KJX4
HQ420254 ADT91308 F6KKG6
AK080816 BAC38031 Q8BNR9
AK139154 BAE23903 Q3UTS7
AK141024 BAE24546 Q3URZ1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pcdh15 NP_001136214 R.norvegicus Pcdh15 690865   XP_002728983 98
H.sapiens PCDH15 65217 Gene Info NP_001136241 93
A.gambiae AgaP_AGAP002310 1273658   XP_312660 33
D.melanogaster Cad99C 43528   NP_001189311 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)