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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Efnb1, ephrin B1
Sequence ID:NM_010110
Entrez Gene ID:13641
Ensembl ID:ENSMUSG00000031217

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X D|X 37.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 99136129 - 99148991

NM_010110 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18849633146896332351
88511629634063096340907
116312559634181696341908
125613819634209096342215
138232589634245396344329

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2648527Full LengthBC006797ephrin B1
3602195Full LengthBC021656ephrin B1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034240  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010110 NP_034240 Q544L9
P52795
Ephrin

Related Sequences

 
mRNAGenPeptSwissProt
U12983 AAA53231 P52795
BC006797 AAH06797 Q544L9
P52795
BC021656 AAH21656 Q544L9
P52795
AK034996 BAC28907 Q544L9
P52795
Z48781 CAA88695 Q544L9
P52795

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Efnb1 NP_034240 R.norvegicus Efnb1 25186   NP_058785 99
H.sapiens EFNB1 1947 Gene Info NP_004420 96
C.elegans efn-2 177949   NP_501955 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)