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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Snx18, sorting nexin 18
Sequence ID:NM_130796
Entrez Gene ID:170625
Ensembl ID:ENSMUSG00000042364

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D2.2|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 113592182 - 113618545

NM_130796 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
212703114382387114385069
27044466114407009114408771

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6516923Full LengthBC063089sorting nexin 18
8860820Full LengthBC137801sorting nexin 18
40131254Full LengthBC145951sorting nexin 18
4011275IncompleteBC040407sorting nexin associated golgi protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_570614  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_130796 NP_570614 Q91ZR2 SH3_1
PX

Related Sequences

 
mRNAGenPeptSwissProt
BC063089 AAH63089 Q8C788
BC137801 AAI37802 Q8C788
BC145951 AAI45952 Q8C788
AF408408 AAL02105 Q91ZR2
AK052343 BAC34945 Q8C788
AK143645 BAE25477 Q3UPB9
AK155955 BAE33520 Q3U1H7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snx18 NP_570614 R.norvegicus Snx18 310097   NP_001101122 99
H.sapiens SNX18 112574 Gene Info NP_001096045 97
A.gambiae AgaP_AGAP011751 1280889   XP_320759 40
C.elegans lst-4 178361   NP_502693 38
D.melanogaster SH3PX1 39136   NP_648348 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)