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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cxcr1, chemokine (C-X-C motif) receptor 1
Sequence ID:NM_178241
Entrez Gene ID:227288
Ensembl ID:ENSMUSG00000048480

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C3|1 40.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 74191805 - 74192861

NM_178241 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
210857423835974239442
108611257424116574241204

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016441Full LengthBC153097interleukin 8 receptor, alpha
100014502BC141556interleukin 8 receptor, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_839972  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178241 NP_839972 Q810W6 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC141556 AAI41557  
BC153097 AAI53098  
AY227797 AAO72727 Q810W6
AY390263 AAQ84305 Q810W6
AY749637 AAU87365 Q810W6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcr1 NP_839972 R.norvegicus Cxcr1 54258   NP_062183 89
H.sapiens CXCR1 3577 Gene Info NP_000625 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)