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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pgk1, phosphoglycerate kinase 1
Sequence ID:NM_008828
Entrez Gene ID:18655
Ensembl ID:ENSMUSG00000062070

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X C-D|X 45.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 106187178 - 106203696

 Exon Info From UCSC:
NM_008828

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5060103Full LengthBC108372phosphoglycerate kinase 1
6828087Full LengthBC083355phosphoglycerate kinase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032854  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_008828 NP_032854 P09411 EC 2.7.2.3 PGK

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M15668 AAA70267 P09411 EC 2.7.2.3
BC083355 AAH83355 P09411 EC 2.7.2.3
BC108372 AAI08373 P09411 EC 2.7.2.3
EF437325 ABS83503 B0LAA9  
AK133877 BAE21906 P09411 EC 2.7.2.3
AK145846 BAE26693 P09411 EC 2.7.2.3
AK164440 BAE37790 P09411 EC 2.7.2.3
AK167441 BAE39527 P09411 EC 2.7.2.3
AK167459 BAE39544 P09411 EC 2.7.2.3
AK167710 BAE39754 P09411 EC 2.7.2.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pgk1 NP_032854 R.norvegicus Pgk1 24644   NP_445743 99
H.sapiens PGK1 5230 Gene Info NP_000282 98
A.gambiae AgaP_AGAP008802 1275659   XP_314928 73
C.elegans pgk-1 171965   NP_491245 73
D.melanogaster Pgk 33461   NP_476676 71
N.crassa NCU07914 3878602   XP_962430 69
S.pombe pgk1 2539764   NP_596730 67
S.cerevisiae PGK1 850370   NP_009938 65
P.falciparum PGK 813501   XP_001352096 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)