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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hmgb3, high mobility group box 3
Sequence ID:NM_008253
Entrez Gene ID:15354
Ensembl ID:ENSMUSG00000015217

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X|X A1

Chromosomal Position (from UCSC)

Chromosomal Position:X: 71558049 - 71560654

NM_008253 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11986880916768809364
1993536881122768811381
3544936881160768811746
4946686881227268812446
66916566881284168813828

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3980194Full LengthBC011276high mobility group box 3
9007340Full LengthBC158037high mobility group box 3
30540227Full LengthBC083352high mobility group box 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032279  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008253 NP_032279 Q544R9
O54879
HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
AF022465 AAC16925 Q544R9
O54879
BC011276 AAH11276 Q544R9
O54879
BC083352 AAH83352 Q544R9
O54879
BC158037 AAI58038 Q544R9
AK032163 BAC27733 Q544R9
O54879
AK141399 BAE24671 Q544R9
O54879
AK146795 BAE27437 Q544R9
O54879
AK159119 BAE34835 Q544R9
O54879
AK159322 BAE34988 Q544R9
O54879

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hmgb3 NP_032279 R.norvegicus Hmgb3 305373   XP_223440 99
H.sapiens HMGB3 3149 Gene Info NP_005333 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)