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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Set, SET nuclear oncogene
Sequence ID:NM_001204875
NM_023871
Entrez Gene ID:56086
Ensembl ID:ENSMUSG00000054766

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 B|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 30066812 - 30070323

Transcript StartTranscript EndChromosomal Start Chromosomal End
12382991756229917799
2392962992378829923845
2974392992447929924621
4405432992484629924949
5446572992503729925150
6588282992570429925874
8299752992596029926106
97618512992643829927313

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4014298Full LengthBC018255SET translocation
6511600Full LengthBC103791SET translocation
3595810IncompleteBC012508SET translocation

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_076360  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001204875 NP_001191804    
NM_023871 NP_076360 Q9EQU5
Q3T9S3
NAP

Related Sequences

 
mRNAGenPeptSwissProt
BC012508 AAH12508 Q921H2
BC018255 AAH18255 Q9EQU5
Q3T9S3
BC103791 AAI03792 Q9EQU5
Q3T9S3
AB015613 BAA34736 Q9EQU5
AB044937 BAB20793 Q9EQU5
Q3T9S3
AK011630 BAB27745 Q9EQU5
AK014291 BAB29248 Q9CRT3
AK019960 BAB31936 Q9EQU5
AK172327 BAE42947 Q9EQU5
Q3T9S3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Set NP_076360 M.musculus Gm9531 671392 Gene Info XP_001472086 100
R.norvegicus Set 307947   NP_001012522 99
H.sapiens SET 6418 Gene Info NP_001116293 94
A.gambiae AgaP_AGAP003598 1274262   XP_313356 60
D.melanogaster Set 41844   NP_650438 60
C.elegans spr-2 177704   NP_001021333 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta