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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Wdr6, WD repeat domain 6
Sequence ID:NM_031392
Entrez Gene ID:83669
Ensembl ID:ENSMUSG00000066357

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F2|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 108572315 - 108578739

NM_031392 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
781178108474643108475743
11791297108475819108475937
12981414108476024108476140
14151510108476235108476330
15113992108476431108478912
39934169108480824108481000

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5346943Full LengthBC054367WD repeat domain 6
5708880Full LengthBC050894WD repeat domain 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_113569  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_031392 NP_113569 Q99ME2 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC035951 AAH35951 Q8CFV1
BC050894 AAH50894 Q99ME2
BC054367 AAH54367 Q99ME2
AF348591 AAK31166 Q99ME2
AB041854 BAB87119 Q8R539
AK037181 BAC29740 Q99ME2
AK146617 BAE27306 Q99ME2
AK163752 BAE37480 Q99ME2
AK165935 BAE38469 Q3TMH3
AK169357 BAE41106 Q3TEZ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Wdr6 NP_113569 R.norvegicus Wdr6 301007   NP_001006989 94
H.sapiens WDR6 11180 Gene Info NP_060501 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)