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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scn4b, sodium channel, type IV, beta
Sequence ID:NM_001013390
Entrez Gene ID:399548
Ensembl ID:ENSMUSG00000046480

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A5.2|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 45138752 - 45154155

NM_001013390 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1614494712444947184
622344495475544954927
2354634495574944955977
4645934495734844957477
59442444495849344962143

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862421Full LengthBC139399sodium channel, type IV, beta
8862422Full LengthBC139400sodium channel, type IV, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001013408  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001013390 NP_001013408 Q7M729 V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC139399 AAI39400 Q1MXF9
BC139400 AAI39401 Q1MXF9
AY669079 AAU05394 Q7M729
AB118946 BAE93689 Q1MXF9
BK001031 DAA01205 Q7M729

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scn4b NP_001013408 R.norvegicus Scn4b 315611   NP_001008880 98
H.sapiens SCN4B 6330 Gene Info NP_777594 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)