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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col5a3, collagen, type V, alpha 3
Sequence ID:NM_016919
Entrez Gene ID:53867
Ensembl ID:ENSMUSG00000004098

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A3|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 20782793 - 20815038

 Exon Info From UCSC:
NM_016919

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861437Full LengthBC138417collagen, type V, alpha 3
8861439Full LengthBC138419collagen, type V, alpha 3
5029989IncompleteBC024367collagen, type V, alpha 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058615  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016919 NP_058615 Q9JLI2 Collagen
COLFI
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
AF176645 AAF59901 Q9JLI2
BC024367 AAH24367 A1A4B3
BC138417 AAI38418 Q9JLI2
BC138419 AAI38420 Q9JLI2
AB040491 BAB68504 Q920S4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col5a3 NP_058615 R.norvegicus Col5a3 60379   NP_068528 95
H.sapiens COL5A3 50509 Gene Info NP_056534 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)