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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Smtnl1, smoothelin-like 1
Sequence ID:NM_024230
Entrez Gene ID:68678
Ensembl ID:ENSMUSG00000027077

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 E1

Chromosomal Position (from UCSC)

Chromosomal Position:2: 84811177 - 84822554

NM_024230 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13648465133284651695
3655168465544784655598
5176318465576384655877
6327878465604084656195
7888338465713484657179
8349668465728084657412
96716018465843284659066
160217618466264984662808

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3593616Full LengthBC002317smoothelin-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077192  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024230 NP_077192 Q99LM3 CH

Related Sequences

 
mRNAGenPeptSwissProt
BC002317 AAH02317 Q99LM3
AK003989 BAB23109 Q9D143

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smtnl1 NP_077192 R.norvegicus Smtnl1 311167   XP_230278 90
H.sapiens SMTNL1 219537 Gene Info NP_001099035 71
A.gambiae AgaP_AGAP000906 1277420   XP_316883 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)