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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chd4, chromodomain helicase DNA binding protein 4
Sequence ID:NM_145979
Entrez Gene ID:107932
Ensembl ID:ENSMUSG00000063870

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F3|6 58.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 125096568 - 125100520

 Exon Info From UCSC:
NM_145979

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6489649Full LengthBC058578chromodomain helicase DNA binding protein 4
3492938IncompleteBC006035chromodomain helicase DNA binding protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666091  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_145979 NP_666091 Q6PDQ2 EC 3.6.4.12 SNF2_N
Helicase_C
Chromo
PHD
DUF1086
DUF1087
CHDNT
CHDCT2

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC006035 AAH06035 Q99JM0  
BC058578 AAH58578 Q6PDQ2 EC 3.6.4.12
BC071255 AAH71255 Q6IQY9  
AK020564 BAB32135 Q9CTT2  
AK034549 BAC28749 Q8BM83  
AK220473 BAD90499 Q5DTP7  
AK040005 BAE20563 Q3V3I7  
AK132004 BAE20933 Q3V265  
AK145532 BAE26488 Q3ULG0  
AK148402 BAE28532 Q3UFM8  
AK153826 BAE32198 Q3U582  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chd4 NP_666091 H.sapiens CHD4 1108 Gene Info NP_001264 99
R.norvegicus Chd4 117535   XP_232354 99
A.gambiae AgaP_AGAP012009 1280662   XP_320523 61
D.melanogaster Mi-2 40170   NP_001014591 61
C.elegans let-418 178970   NP_504523 57
C.elegans chd-3 181421   NP_510140 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)