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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atn1, atrophin 1
Sequence ID:NM_007881
Entrez Gene ID:13498
Ensembl ID:ENSMUSG00000004263

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F2|6 60.21 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 124742543 - 124744956

NM_007881 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
31592124692561124693122
593773124693247124693427
774917124693765124693908
9181614124694737124695433
16151837124695656124695878
18383807124696037124698006
38083921124699253124699366
39224059124699479124699616
40604234124699764124699938
42354426124706313124706504

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5706586Full LengthBC053051atrophin 1
6406687Full LengthBC050920atrophin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031907  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007881 NP_031907 O35126 Atrophin-1

Related Sequences

 
mRNAGenPeptSwissProt
BC050920 AAH50920 O35126
BC053051 AAH53051 O35126
D87744 BAA13450 O35126

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atn1 NP_031907 R.norvegicus Atn1 29515   NP_058924 97
H.sapiens ATN1 1822 Gene Info NP_001007027 94
N.crassa NCU03053 3879866   XP_963717 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)