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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tia1, cytotoxic granule-associated RNA binding protein 1
Sequence ID:NM_001164078
NM_001164079
NM_011585
Entrez Gene ID:21841
Ensembl ID:ENSMUSG00000071337

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6|6 D2

Chromosomal Position (from UCSC)

Chromosomal Position:6: 86404281 - 86407115

 Exon Info From UCSC:
NM_001164078
NM_001164079
NM_011585

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5353938Full LengthBC023813cytotoxic granule-associated RNA binding protein 1
5702183Full LengthBC046812cytotoxic granule-associated RNA binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035715  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164078 NP_001157550    
NM_001164079 NP_001157551    
NM_011585 NP_035715 Q564E7
P52912
RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
U00689 AAA03711 Q564E7
P52912
U55862 AAC52871 Q564E7
P52912
BC023813 AAH23813 Q8CII5
BC046812 AAH46812 Q80ZW7
AK028340 BAC25892 Q8BT02
AK088486 BAC40385 Q564E7
P52912
AK144222 BAE25782 Q564E7
P52912

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tia1 NP_035715 R.norvegicus Tia1 312510   NP_001012096 98
H.sapiens TIA1 7072 Gene Info NP_071505 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)