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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gm12824, predicted gene 12824
Sequence ID:NM_001085549
Entrez Gene ID:666048
Ensembl ID:ENSMUSG00000070867

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 114612819 - 114615096

NM_001085549 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1196114079328114079523
197757114081497114082057
758904114252895114253041
9051079114259062114259236
10801170114272477114272567
11711443114275347114275619
14446617114282529114287702

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001085549 NP_001079018 B1ATG9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gm12824 NP_001079018 R.norvegicus LOC689914 689914   XP_001072500 97
H.sapiens LOC388630 388630 Gene Info NP_001181915 90
C.elegans C05G5.5 181571   NP_510451 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)