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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rod1, ROD1 regulator of differentiation 1 (S. pombe)
Sequence ID:NM_144904
NM_178164
Entrez Gene ID:230257
Ensembl ID:ENSMUSG00000028382

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 B3|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 59548996 - 59549960

 Exon Info From UCSC:
NM_144904
NM_178164

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3969488Full LengthBC006638ROD1 regulator of differentiation 1 (S. pombe)
4936557Full LengthBC057641ROD1 regulator of differentiation 1 (S. pombe)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_835458  NP_659153  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_144904 NP_659153   RRM_1
NM_178164 NP_835458 Q8BHD7 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC006638 AAH06638 Q8BHD7
BC057641 AAH57641 Q8BHD7
AK006094 BAB24406 Q9DA76
AK033732 BAC28453 Q8BHD7
AK077791 BAC37012 Q8C5Q1
AK088560 BAC40425 Q8BHD7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rod1 NP_659153 R.norvegicus Ptbp3 83515   NP_112636 99
H.sapiens PTBP3 9991 Gene Info NP_001157262 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)