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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Aco1, aconitase 1
Sequence ID:NM_007386
Entrez Gene ID:11428
Ensembl ID:ENSMUSG00000028405

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A5|4 20.9 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 40143480 - 40198334

 Exon Info From UCSC:
NM_007386

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3494686Full LengthBC005454aconitase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031412  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007386 NP_031412 P28271 EC 4.2.1.3 Aconitase
Aconitase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC005454 AAH05454 P28271 EC 4.2.1.3
AK163985 BAE37570 P28271 EC 4.2.1.3
X61147 CAA43455 P28271 EC 4.2.1.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Aco1 NP_031412 R.norvegicus Aco1 50655   NP_059017 96
H.sapiens ACO1 48 Gene Info NP_002188 93
D.melanogaster Irp-1B 41269   NP_524303 70
A.gambiae AgaP_AGAP007258 1269890   XP_308544 69
D.melanogaster Irp-1A 42689   NP_477371 69
C.elegans aco-1 181324   NP_509898 64
A.thaliana ACO3 815120   NP_178634 62
A.thaliana ACO2 828805   NP_567763 61
A.thaliana ACO1 829737   NP_195308 61
P.falciparum PF13_0229 814196   XP_001350142 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)