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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Apcs, serum amyloid P-component
Sequence ID:NM_011318
Entrez Gene ID:20219
Ensembl ID:ENSMUSG00000026542

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H3|1 94.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 172893961 - 172894940

NM_011318 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
30778174824092174824840
7791012174824951174825184

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30308397Full LengthBC061125serum amyloid P-component

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035448  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011318 NP_035448 P12246 Pentaxin

Related Sequences

 
mRNAGenPeptSwissProt
M23248 AAA40091 P12246
M23552 AAA40092 P12246
BC061125 AAH61125 P12246
Q4JFI8
AK144248 BAE25796 P12246
Q4JFI8
AK165699 BAE38344 P12246
Q4JFI8
X14079 CAA32243 P12246
Y00426 CAA68488 P12246

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Apcs NP_035448 R.norvegicus Apcs 29339   NP_058866 81
H.sapiens APCS 325 Gene Info NP_001630 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)