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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lmx1a, LIM homeobox transcription factor 1 alpha
Sequence ID:NM_033652
Entrez Gene ID:110648
Ensembl ID:ENSMUSG00000026686

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H2.3|1 88.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 167689774 - 167846761

NM_033652 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1293169619688169619980
294480169622111169622297
481713169721467169721699
714886169760676169760848
887964169762947169763024
9651034169771033169771102
10351205169774762169774932
12063338169776731169778863

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40048180Full LengthBC109167LIM homeobox transcription factor 1 alpha
40048181Full LengthBC109168LIM homeobox transcription factor 1 alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_387501  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_033652 NP_387501 Q9JKU8
Q543W2
Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
AF226662 AAF43012 Q9JKU8
Q543W2
BC109167 AAI09168 Q9JKU8
Q543W2
BC109168 AAI09169 Q9JKU8
Q543W2
AK044944 BAC32153 Q9JKU8
Q543W2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lmx1a NP_387501 R.norvegicus Lmx1a 289201   NP_001099437 100
H.sapiens LMX1A 4009 Gene Info NP_001167540 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)