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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sgms1, sphingomyelin synthase 1
Sequence ID:NM_001168525
NM_001168526
NM_144792
Entrez Gene ID:208449
Ensembl ID:ENSMUSG00000040451

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 C1|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 32123478 - 32210956

 Exon Info From UCSC:
NM_001168525
NM_001168526
NM_144792

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5041121Full LengthBC019443sphingomyelin synthase 1
6307174Full LengthBC085298sphingomyelin synthase 1
30635490IncompleteBC076618sphingomyelin synthase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_659041  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001168525 NP_001161997      
NM_001168526 NP_001161998      
NM_144792 NP_659041 Q8VCQ6 EC 2.7.8.27 SAM_1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC019443 AAH19443 Q8VCQ6 EC 2.7.8.27
BC085298 AAH85298 Q8VCQ6 EC 2.7.8.27
AY509044 AAS90514 Q8VCQ6 EC 2.7.8.27
AK076554 BAC36390 Q8VCQ6 EC 2.7.8.27
AK079254 BAC37590 Q8VCQ6 EC 2.7.8.27
AK082974 BAC38717 Q8VCQ6 EC 2.7.8.27
AK133967 BAE21960 Q8VCQ6 EC 2.7.8.27
AK146782 BAE27428 Q8VCQ6 EC 2.7.8.27
AK150272 BAE29428 Q8VCQ6 EC 2.7.8.27
AK151170 BAE30173 Q8VCQ6 EC 2.7.8.27
AK152312 BAE31117 Q8VCQ6 EC 2.7.8.27
AK153406 BAE31966 Q8VCQ6 EC 2.7.8.27
AK160539 BAE35856 Q8VCQ6 EC 2.7.8.27

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sgms1 NP_001161997 R.norvegicus Sgms1 353229   NP_852051 98
H.sapiens SGMS1 259230 Gene Info NP_671512 98
A.gambiae AgaP_AGAP008926 1279896   XP_319678 49
C.elegans sms-1 178072   NP_502169 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)