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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gata6, GATA binding protein 6
Sequence ID:NM_010258
Entrez Gene ID:14465
Ensembl ID:ENSMUSG00000005836

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18 A1|18 3.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 11054494 - 11084496

NM_010258 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12341105250711052740
23513881105403311055186
138915551105904911059215
155616811106301511063140
168217691106450711064594
177018731106468511064788
187431941108431211085632

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034388  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010258 NP_034388 Q61169 GATA
GATA-N

Related Sequences

 
mRNAGenPeptSwissProt
S82462 AAB37426 Q61169
U51335 AAC52841 Q61169
AF179425 AAD55267 Q61169
AK142381 BAE25049 Q61169

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gata6 NP_034388 R.norvegicus Gata6 29300   NP_062058 98
H.sapiens GATA6 2627 Gene Info NP_005248 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)