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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Calm2, calmodulin 2
Sequence ID:NM_007589
Entrez Gene ID:12314
Ensembl ID:ENSMUSG00000036438

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 E4|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 87433413 - 87446863

NM_007589 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16558783274087833394
6567918783441587834550
7928988783494387835049
89910428783513087835273
104310738784203587842065
107412168784613287846274

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4006686Full LengthBC021347calmodulin 2
30072702Full LengthBC051444calmodulin 2
30526959Full LengthBC100301calmodulin 2
3153823IncompleteBC010730calmodulin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031615  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007589 NP_031615 P62204 efhand

Related Sequences

 
mRNAGenPeptSwissProt
L31642 AAA65934 P62204
BC010730 AAH10730 P62204
BC021347 AAH21347 P62204
BC051444 AAH51444 P62204
BC100301 AAI00302 P62204
AK012247 BAB28116 P62204
AK012564 BAB28319 P62204
AK013068 BAB28631 P62204
AK152303 BAE31109 P62204
AK160636 BAE35930 P62204
AK161268 BAE36280 P62204
AK161984 BAE36667 P62204
AK168741 BAE40582 P62204

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Calm2 NP_031615 M.musculus Calm3 12315 Gene Info NP_031616 100
M.musculus Calm1 12313 Gene Info NP_033920 100
R.norvegicus Calm1 24242   NP_114175 100
R.norvegicus Calm3 24244   NP_036650 100
R.norvegicus Calm2 50663   NP_059022 100
A.gambiae AgaP_AGAP010957 1271007   XP_309749 99
C.elegans cmd-1 178614   NP_503386 98
D.melanogaster Cam 36329   NP_523710 98
A.thaliana CAM4 842959   NP_176814 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)