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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab5a, RAB5A, member RAS oncogene family
Sequence ID:NM_025887
Entrez Gene ID:271457
Ensembl ID:ENSMUSG00000017831

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 C|17 32.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 53483912 - 53506429

NM_025887 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13755361855853618932
3766305362314553623399
6317825363685153637002
7839055363771253637834
9069995363970053639793
100023645364563853647002

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2649317Full LengthBC004842RAB5A, member RAS oncogene family
3709729Full LengthBC034370RAB5A, member RAS oncogene family
5322132Full LengthBC096481RAB5A, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080163  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025887 NP_080163 Q9CQD1 Ras

Related Sequences

 
mRNAGenPeptSwissProt
BC004842 AAH04842 Q9CQD1
BC034370 AAH34370 Q9CQD1
BC096481 AAH96481 Q9CQD1
AK002631 BAB22245 Q9CQD1
AK008198 BAB25527 Q9CQD1
AK010495 BAB26985 Q9CQD1
AK036011 BAC29275 Q8CBH3
AK081999 BAC38391 Q9CQD1
AK150296 BAE29448 Q9CQD1
AK150346 BAE29485 Q9CQD1
AK150405 BAE29531 Q9CQD1
AK151066 BAE30082 Q9CQD1
AK153131 BAE31744 Q9CQD1
AK159706 BAE35305 Q9CQD1
AB232593 BAF02855 Q9CQD1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab5a NP_080163 R.norvegicus Rab5a 64633   NP_073183 100
R.norvegicus LOC100361891 100361891   XP_002728164 99
H.sapiens RAB5A 5868 Gene Info NP_004153 98
C.elegans rab-5 172755   NP_492481 79
A.thaliana RHA1 834549   NP_199326 65
A.thaliana ARA7 827706   NP_193699 63
N.crassa NCU06410 3872099   XP_955952 60
S.cerevisiae VPS21 854256   NP_014732 59
P.falciparum Rab5c 813204   XP_001350999 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)